Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865755:139865769:[+] chr1:227843873:227843885:[+] nonBSJ supported 3UTR

circRNA 5':GUCAAUCAGUGUCUU 3'


            ||| ||:|||


target  3':AAGUGA--CAUAGAC 5'

 -6.80 1 RIC-seq
chrX:139865794:139865808:[+] chr1:227843873:227843885:[+] nonBSJ supported 3UTR

circRNA 5':GUCAAUCAGUGUCUU 3'


            ||| ||:|||


target  3':AAGUGA--CAUAGAC 5'

 -6.80 1 RIC-seq
chrX:139865513:139865555:[+] chr1:227842123:227842164:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGUC----UUCCAGCA 3'


            ||||||| ||| || |||||| ||| ::|||||


target  3':AGAGGUCAGAAAGU---GAUUCACGUUUAA--CAGUUCCGGGGUCGA 5'

 -27.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:227842123:227842164:[+] target - chr1:227842139-227842140 A>G EOPC-DE ICGC
chr1:227842123:227842164:[+] target - chr1:227842158-227842159 C>T LICA-CN ICGC