Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866209:139866251:[+] chr17:7404257:7404303:[+] nonBSJ supported CDS

circRNA 5':UCUU-C-CAGGAAAUCCGUG-UC--UUCCAGCAAGUCCACGUCUUCCA 3'


            ||| | ||||| :||:|| || :||| ||||| |: ||


target  3': GAAUGUGUCCUACGGGUACUAGUCGAGGGGUAAGAGGUGGUGGUGGA 5'

 -30.60 1 RIC-seq
chrX:139866209:139866258:[+] chr17:7404258:7404303:[+] nonBSJ supported CDS

circRNA 5':UCUU-C-CAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGC 3'


            ||| | ||||| :||:|| |||| ||| |:| :|||| || :|


target  3': GAAUGUGUCCUACGGGUACUA---GUCG---AGGGGUAAGAGGUGGUGGUGG 5'

 -31.20 1 RIC-seq
chrX:139866220:139866246:[+] chr17:7399588:7399616:[+] nonBSJ supported CDS

circRNA 5':AUCCGUGUCUU--CCAGCAAGUCCACGUC 3'


            || |||||| |||| |||:||||||


target  3':AAGUAACAGAAGUGGUCCUUCGGGUGCAC 5'

 -28.50 1 RIC-seq