Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866203:139866231:[+] chr15:64791626:64791671:[+] nonBSJ supported CDS

circRNA 5':UCCGGGU-----------------CUUCCAGGAAA-UCCG-UGUCUUC 3'


            |||||| |:||| ||| |||: || ||:


target  3':UGGCCCAAACGUAGGUGAGGAAAGGGAGG-CCUCCGAGGUGAC-GAGU 5'

 -24.70 1 RIC-seq
chrX:139866203:139866232:[+] chr15:64791642:64791671:[+] nonBSJ supported CDS

circRNA 5':UCCGGGU---CUUCCAGGAAAUCCGUGUCUUCC 3'


            |||||| | |||| ||| :|:|||


target  3':UGGCCCAAACGUAGGUG----AGGAAAGGGAGGC 5'

 -23.60 7 RIC-seq
chrX:139866291:139866321:[+] chr15:64791626:64791661:[+] nonBSJ supported CDS

circRNA 5':AAUCCUUGUC-UUCCCUCAAA----UCCAUAGCUUC 3'


            |||| :| ||||||| ||||: |||:


target  3':GUAGGUGAGGAAAGGGAGGCCUCCGAGGUGACGAGU 5'

 -26.20 8 RIC-seq
chrX:139866293:139866321:[+] chr15:64791626:64791660:[+] nonBSJ supported CDS

circRNA 5': UCCUUGUC-UUCCCUCAAA----UCCAUAGCUUC 3'


            ||| :| ||||||| ||||: |||:


target  3':UAGGUGAGGAAAGGGAGGCCUCCGAGGUGACGAGU 5'

 -24.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866291:139866321:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866293:139866321:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC