Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866459:139866518:[+] chr13:44466737:44466774:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUU 3'


            ||||: |||||: |||| ||:||| || || ||||


target  3':ACAGAG------------ACAGAG-------UCCAA--AGGAGGA-UUAAAGAUCCAGAU 5'

 -21.80 23 RIC-seq
chrX:139866561:139866577:[+] chr13:44467218:44467235:[+] nonBSJ supported 3UTR

circRNA 5':AAUAUAUGUC-UUCCAAC 3'


            |||:| |:||||


target  3':AUAUGUUAAAAAGGGUUU 5'

 -6.70 1 RIC-seq
chrX:139866561:139866584:[+] chr13:44467210:44467235:[+] nonBSJ supported 3UTR

circRNA 5':AAUAUAUGUC-UUCCAACU--AAGCUA 3'


            |||:| |:|||| ||:||


target  3':AUAUGUUAAAAAGGGUUUACUUUUGA 5'

 -8.80 1 RIC-seq
chrX:139866561:139866585:[+] chr13:44467208:44467235:[+] nonBSJ supported 3UTR

circRNA 5':AAUAUAUGUC-UUCCAACU--AAGCUAC 3'


            |||:| |:|||| ||:|||


target  3':AUAUGUUAAAAAGGGUUUACUUUUGAUU 5'

 -10.10 43 RIC-seq
chrX:139866561:139866585:[+] chr13:44467209:44467235:[+] nonBSJ supported 3UTR

circRNA 5':AAUAUAUGUC-UUCCAACU--AAGCUAC 3'


            |||:| |:|||| ||:|||


target  3':AUAUGUUAAAAAGGGUUUACUUUUGAU 5'

 -9.90 1 RIC-seq