Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866300:139866340:[+] chr3:37033531:37033563:[-] nonBSJ supported CDS

circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCC 3'


            ||||||| ||| |||: |||: | ||


target  3':AAAGGGAG---AGGAUUCGGUUAACAA----GUCU-GUAGC 5'

 -20.20 1 RIC-seq
chrX:139866300:139866341:[+] chr3:37033531:37033575:[-] nonBSJ supported CDS

circRNA 5':CUUCCCUCAAAUCCAUAGCU------UCCGAAAAA-UCCAGGUCUUCCA 3'


            ||||||| ||| |||: || || |||| :||


target  3':AAAGGGAG---AGGAUUCGGUUAACAAGUCUGUAGCAGGUAAUU-GGGA 5'

 -25.30 1 RIC-seq
chrX:139866300:139866362:[+] chr3:37033531:37033586:[-] nonBSJ supported CDS

circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCA-GCA 3'


            ||||||| ||| |||: :|| |||| ||:|| || ||| ||


target  3':AAAGGGAG---AGGAUUCGGUUAACAAGUCUG--UAGCAGGUAA-UUGGGAA-AGU-GGUACGA 5'

 -36.10 23 RIC-seq
chrX:139866301:139866362:[+] chr3:37033533:37033586:[-] nonBSJ supported CDS

circRNA 5':UUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCA-GCA 3'


            |||||| ||| |||: :|| |||| ||:|| || ||| ||


target  3': AGGGAG---AGGAUUCGGUUAACAAGUCUG--UAGCAGGUAA-UUGGGAA-AGU-GGUACGA 5'

 -34.40 1 RIC-seq
chrX:139866302:139866362:[+] chr3:37033532:37033586:[-] nonBSJ supported CDS

circRNA 5': UCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCA-GCA 3'


            |||||| ||| |||: :|| |||| ||:|| || ||| ||


target  3':AAGGGAG---AGGAUUCGGUUAACAAGUCUG--UAGCAGGUAA-UUGGGAA-AGU-GGUACGA 5'

 -35.00 2 RIC-seq
chrX:139866303:139866362:[+] chr3:37033533:37033586:[-] nonBSJ supported CDS

circRNA 5': CCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCA-GCA 3'


            ||||| ||| |||: :|| |||| ||:|| || ||| ||


target  3':AGGGAG---AGGAUUCGGUUAACAAGUCUG--UAGCAGGUAA-UUGGGAA-AGU-GGUACGA 5'

 -33.40 2 RIC-seq
chrX:139866305:139866362:[+] chr3:37033533:37033586:[-] nonBSJ supported CDS

circRNA 5': CUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCA-GCA 3'


            |:| ||| |||: :|| |||| ||:|| || ||| ||


target  3':AGGGAG-AGGAUUCGGUUAACAAGUCUG--UAGCAGGUAA-UUGGGAA-AGU-GGUACGA 5'

 -27.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866300:139866340:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866300:139866341:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866300:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866301:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866302:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866303:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866305:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC