Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866205:139866241:[+] chr2:208842209:208842239:[-] nonBSJ supported CDS

circRNA 5':CGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAA-GUCC 3'


            |||| |||| ||: | |||| |:|


target  3':UUCCA-------CUUUCAAGACGUAUUGUCGAAACGGU 5'

 -11.50 1 RIC-seq
chrX:139866205:139866242:[+] chr2:208842209:208842238:[-] nonBSJ supported CDS

circRNA 5':CGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCA 3'


            |||| |||| ||: | |||| ||


target  3':UUCCA-------CUUUCAAGACGUAUUGUCGAAACGG 5'

 -12.00 2 RIC-seq
chrX:139866205:139866243:[+] chr2:208842209:208842239:[-] nonBSJ supported CDS

circRNA 5':CGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCAC 3'


            |||| |||| ||: | |||| |||


target  3':UUCCA-------CUUUCAAGACGUAUUGUCGAAACGGU 5'

 -12.40 20 RIC-seq