Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865556:139865578:[+] chr8:144998344:144998368:[-] nonBSJ supported CDS

circRNA 5':AUUACUG-GUCUUCCACCAAAUCC 3'


            |:| :| |||:||||||| :||


target  3':GAGUCGCACAGGAGGUGGUCGGGGA 5'

 -23.10 1 RIC-seq
chrX:139865556:139865579:[+] chr8:144998344:144998368:[-] nonBSJ supported CDS

circRNA 5':AUUACUG-GUCUUCCACCAAAUCCA 3'


            |:| :| |||:||||||| :||


target  3':GAGUCGCACAGGAGGUGGUCGGGGA 5'

 -24.40 45 RIC-seq
chrX:139865562:139865579:[+] chr8:144998351:144998368:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCACCAAAUCCA 3'


            |||:||||||| :||


target  3':ACAGGAGGUGGUCGGGGA 5'

 -24.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:144998344:144998368:[-] target 8260 chr8:144998362-144998363 AG>A Epidermolysis_bullosa_simplex_5B,_with_muscular_dystrophy ClinVar
chr8:144998351:144998368:[-] target 8260 chr8:144998362-144998363 AG>A Epidermolysis_bullosa_simplex_5B,_with_muscular_dystrophy ClinVar