Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865757:139865797:[+] chr4:17960672:17960723:[-] nonBSJ supported Intron

circRNA 5':CAAU-CAGUGUCUU-CCAGA---------AAGAAAUCCAGGUCUUCCAGUCA 3'


            ||| ||:|| || | || ||| ||| | ||||||||||


target  3':UUUAUGUUACUUAACGAACUCGACAUAAAUUCAUUAUGCGAAGAAGGUCAGA 5'

 -19.00 1 RIC-seq
chrX:139865784:139865836:[+] chr4:17960664:17960723:[-] nonBSJ supported Intron

circRNA 5':AGGUCUUCCAGUCAAUCAGUGUCUU-CCAGA---------AAGAAAUCCAGGUCUUCCAGUCA 3'


            || |||| ||:|| || | || ||| ||| | ||||||||||


target  3':AUC-GAAGAUUUAU--GUUACUUAACGAACUCGACAUAAAUUCAUUAUGCGAAGAAGGUCAGA 5'

 -22.40 1 RIC-seq