Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865747:139865775:[+] chr1:197125908:197125939:[-] nonBSJ supported 3UTR

circRNA 5':AUCUUCCAGUCAAUCA----GUGUCUUCCAGAA 3'


            || |||| |::|||:|||||


target  3':AAGU-GGUCUUAAUAUAAUGCGUAGAGGGUCUG 5'

 -21.80 1 RIC-seq
chrX:139865794:139865853:[+] chr1:197125883:197125939:[-] nonBSJ supported 3UTR

circRNA 5':GUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCA--------GUGUCUUCCAGAA 3'


            ||||||| |||| ||||: |||| :||| |::|||:|||||


target  3':AAGUUAGU------AGGUGA--CUUUGAUAAU-GAAGU--GGUCUUAAUAUAAUGCGUAGAGGGUCUG 5'

 -33.90 1 RIC-seq