Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866290:139866323:[+] chr1:43282926:43282966:[-] nonBSJ supported 5UTR

circRNA 5':AAAUCCUUGUCUUCCCUCAA-------AUCCAUAGCUUCCG 3'


            ||||||:|:||||||:| |:||| ||| ||


target  3':AUUAGGAGCGGAAGGGGGCUGGUGACCUGGGUCGCGACGGA 5'

 -38.10 1 RIC-seq
chrX:139866290:139866340:[+] chr1:43282926:43282980:[-] nonBSJ supported 5UTR

circRNA 5':AAAUCCUUGUCUUCCCUCAA-------AUCCAUAGCUUCCGAAAAAUCCAGGUCUUCC 3'


            ||||||:|:||||||:| |:||| ||| || || | :|:||


target  3':AUUAGGAGCGGAAGGGGGCUGGUGACCUGGGUCGCGACGGACGGGU-GG-CGGGGAG 5'

 -45.60 10 RIC-seq
chrX:139866290:139866341:[+] chr1:43282926:43282966:[-] nonBSJ supported 5UTR

circRNA 5':AAAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCA 3'


            ||||||:|:||||||:| |||: |:|||| || ||


target  3':AUUAGGAGCGGAAGGGGGCU--GGUGACC---------UGGGUCGCGACGGA 5'

 -41.90 1 RIC-seq
chrX:139866295:139866359:[+] chr1:43282930:43282969:[-] nonBSJ supported 5UTR

circRNA 5': CUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCG-UGUCUUCCA 3'


            ||:|:||||||:| |||: || :|||| || ||:|| ||


target  3':GGAGCGGAAGGGGGCU--GGUGA----------------CCU--GGGUC------GCGACGGACGG 5'

 -36.70 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866290:139866323:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866290:139866340:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866290:139866341:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866295:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC