Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866576:139866642:[+] chr12:133303445:133303495:[-] nonBSJ supported 3UTR

circRNA 5':ACUAAGCUACGUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAG-GUCU-UCC----AGCAUCUC-CAGGGC 3'


            |:||||: |:|||| :|||: ||| |||| || || |||||


target  3':CGGUUCGG----------------------GGAGGA-GUAGGUGUCGCAGACAGCCUACUCCACUCAUGUCCCA 5'

 -31.10 1 RIC-seq
chrX:139866580:139866642:[+] chr12:133303432:133303495:[-] nonBSJ supported 3UTR

circRNA 5':AGCU-ACGUCUUCCAACAAAUCCAUG-UCUUCCUAUAUCUCCAG-GUCU-UCC----AGCAUCUC-CAGGGC 3'


            ||| |||:||:| ||| | :|:|||| :|||: ||| |||| || || |||||


target  3':ACGAGUGCGGAGGC-------GGUUCGGGGAGGA-GUAGGUGUCGCAGACAGCCUACUCCACUCAUGUCCCA 5'

 -42.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866576:139866642:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866580:139866642:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC