Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865823:139865853:[+] chr9:140062356:140062380:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGUCAGUCAGUGUCUUCCAGAA 3'


            || ||||| |||| |:||||| ||


target  3':ACCCGAAGGG-AGUC-----CGGAAGGGCUC 5'

 -24.70 27 RIC-seq
chrX:139865824:139865853:[+] chr9:140062356:140062380:[+] nonBSJ supported 3UTR

circRNA 5': GGUCUUCCAGUCAGUCAGUGUCUUCCAGAA 3'


            || ||||| |||| |:||||| ||


target  3':ACCCGAAGGG-AGUC-----CGGAAGGGCUC 5'

 -24.90 1 RIC-seq
chrX:139865912:139865927:[+] chr9:140051462:140051476:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGC 3'


            ||| ||||||||||


target  3':CGGG-CCAGAAGGUCU 5'

 -20.70 2 RIC-seq
chrX:139865937:139865964:[+] chr9:140051461:140051490:[+] nonBSJ supported CDS

circRNA 5':UCUUCCUGAAGA----UCCACGUCUUCCAGAA 3'


            |:|| |||||| :|| ||||||||||


target  3': GGAGAACUUCUCGCCGGGC-CAGAAGGUCUA 5'

 -27.90 45 RIC-seq
chrX:139865939:139865964:[+] chr9:140051461:140051489:[+] nonBSJ supported CDS

circRNA 5':UUCCUGAAGA----UCCACGUCUUCCAGAA 3'


            || |||||| :|| ||||||||||


target  3':GAGAACUUCUCGCCGGGC-CAGAAGGUCUA 5'

 -25.60 2 RIC-seq
chrX:139866767:139866790:[+] chr9:140055844:140055868:[+] nonBSJ supported CDS

circRNA 5':ACGUCUCCAGUGUGCUGAUCUU-CU 3'


            || |||| ||||||:|| ||| |:


target  3':GGC-GAGGACACACGGCUUGAACGGU 5'

 -26.90 10 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:140055844:140055868:[+] target 1801825 chr9:140055848-140055849 A>C Intellectual_disability,_autosomal_dominant_8 ClinVar