Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866204:139866245:[+] chr5:17217803:17217840:[+] nonBSJ supported 5UTR

circRNA 5': CCGGGUCUUCCA-GGAAAUCCGUGUCUUCCAGCAAGUCCACGU 3'


            || ||:| ||| | |||:|| || || |||


target  3':CGGACCGGCGACCGCCUCCG---AGAGAGGGCCG---AGCUGCC 5'

 -22.60 15 RIC-seq
chrX:139866204:139866245:[+] chr5:17217804:17217840:[+] nonBSJ supported 5UTR

circRNA 5': CCGGGUCUUCCA-GGAAAUCCGUGUCUUCCAGCAAGUCCACGU 3'


            || ||:| ||| | |||:|| || || |||


target  3':CGGACCGGCGACCGCCUCCG---AGAGAGGGCCG---AGCUGC 5'

 -22.20 2 RIC-seq
chrX:139866204:139866260:[+] chr5:17217782:17217840:[+] nonBSJ supported 5UTR

circRNA 5': CCGGGUCUUCCA-GGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAA----AGCCA 3'


            || ||:| ||| | |||:|| || | | || :|| ||||


target  3':CGGACCGGCGACCGCCUCCG---AGAGAGGGCCGAGCUGCCGCCUCGGGCCUCGCUCCUCGG 5'

 -27.60 19 RIC-seq
chrX:139866208:139866245:[+] chr5:17217803:17217841:[+] nonBSJ supported 5UTR

circRNA 5': GUCUU-CCA--GGAAAUCCGUGUCUUCCAGCAAGUCCACGU 3'


            |:|| || || | |||:|| || || |||


target  3':ACGGACCGGCGACCGCCUCCGAGAGAGGGCCG---AGCUGCC 5'

 -20.50 1 RIC-seq