Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865349:139865380:[+] chr2:134252833:134252861:[-] nonBSJ supported Intron

circRNA 5':UGGCACCUGUGUCAAGGUCUUCCAACAACUCC 3'


            || ||:||||| :|||: ||||


target  3': CCU--GAUACAGUGUCAGGUAAAGAGUGAGU 5'

 -21.90 1 RIC-seq
chrX:139865716:139865745:[+] chr2:134260701:134260731:[-] nonBSJ supported Intron

circRNA 5':CAGUAAAUCUAGUUCUUCCAGAAA-AAUCUA 3'


            ||||||:|:|||:|: |||| ||:|:


target  3':AUCAUUUGGGUCAGGGUGGUCGUUGUUGGGA 5'

 -30.40 1 RIC-seq
chrX:139865716:139865772:[+] chr2:134260701:134260773:[-] nonBSJ supported Intron

circRNA 5':CAGUAAAUCUAGUUCUUCCAGAAA-AAUCUAGAUCUUCCAGUCAAUC---AGUG-------------UCUUCCA 3'


            ||||||:|:|||:|: |||| ||:|: :|| |||| ||||||


target  3':AUCAUUUGGGUCAGGGUGGUCGUUGUUGGGAACCAAAAA-UAGAAUAAUAUCACUGACAAUAAGUAAAGAAGGA 5'

 -36.70 1 RIC-seq
chrX:139865824:139865850:[+] chr2:134187074:134187102:[-] nonBSJ supported Intron

circRNA 5':GGUCUUCCAGUCA---GUCAGUGU-CUUCCA 3'


            || |:||||: ||| |||| |::||


target  3':ACA-AGGGUCGACAUACAGACACACGGGGG 5'

 -22.70 3 RIC-seq
chrX:139865827:139865850:[+] chr2:134187076:134187100:[-] nonBSJ supported Intron

circRNA 5':CUUCCAGUCA---GUCAGUGUCUUCCA 3'


            |:||||: ||| |||| :||


target  3':AAGGGUCGACAUACAGACACAC-GGG 5'

 -17.60 1 RIC-seq
chrX:139865827:139865850:[+] chr2:134187076:134187102:[-] nonBSJ supported Intron

circRNA 5':CUUCCAGUCA---GUCAGUGU-CUUCCA 3'


            |:||||: ||| |||| |::||


target  3':AAGGGUCGACAUACAGACACACGGGGG 5'

 -22.50 1 RIC-seq
chrX:139865827:139865850:[+] chr2:134187077:134187102:[-] nonBSJ supported Intron

circRNA 5':CUUCCAGUCA---GUCAGUGU-CUUCCA 3'


            |:||||: ||| |||| |::||


target  3': AGGGUCGACAUACAGACACACGGGGG 5'

 -21.60 1 RIC-seq
chrX:139866125:139866148:[+] chr2:134237973:134237995:[-] nonBSJ supported Intron

circRNA 5':AUGGCCUCCAGG-UCUUCCAGACUA 3'


            ||| ||||| | |||:|||| ||


target  3':AACC-GAGGUACAAGAGGGUC-GAA 5'

 -25.30 2 RIC-seq
chrX:139866637:139866649:[+] chr2:134099793:134099804:[-] nonBSJ supported Intron

circRNA 5':CAGGGCUUCCAGC 3'


            ||||||| |||


target  3':AUCCCGAA-GUCC 5'

 -14.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:134260701:134260731:[-] target - chr2:134260713-134260714 T>C LAML-KR ICGC
chr2:134260701:134260773:[-] target - chr2:134260713-134260714 T>C LAML-KR ICGC