Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866349:139866386:[+] chr2:242512858:242512891:[+] nonBSJ supported 3UTR

circRNA 5':CGUGUCUUCCAGCAAAUCCACGUCUU-CCAACAAAGCCA 3'


            |: ||||||||| || |:| ||| :||


target  3':UCG-AGAAGGUCGA--AGU--CGGUCCGGUCCCAGUGGA 5'

 -23.90 2 RIC-seq
chrX:139866349:139866408:[+] chr2:242512844:242512891:[+] nonBSJ supported 3UTR

circRNA 5':CGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAU-GUCUUCCAUCAAAUU-AAUGUC 3'


            |: ||||||||| || ||| |||| ||| || ||| ||| |||||


target  3':UCG-AGAAGGUCGA--------AGUCGGUC----CGGUCCCAGU-GGAAGUCUAACUUACAC 5'

 -31.00 17 RIC-seq
chrX:139866352:139866408:[+] chr2:242512844:242512889:[+] nonBSJ supported 3UTR

circRNA 5':GUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAU-GUCUUCCAUCAAAUU-AAUGUC 3'


            ||||||||| || ||| |||| ||| || ||| ||| |||||


target  3':GAGAAGGUCGA--------AGUCGGUC----CGGUCCCAGU-GGAAGUCUAACUUACAC 5'

 -30.60 1 RIC-seq