Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866644:139866701:[+] chr18:67812856:67812901:[-] nonBSJ supported CDS

circRNA 5':UCCAGCAUCUGCUC-GUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCA 3'


            ||||| ||| || ||| |||| |||| || || ||||||


target  3': GGUCG-AGAGAAGACAGUAGGU----------CAGACUCAAGUUAUC-CAAAGAAGGG 5'

 -31.90 11 RIC-seq
chrX:139866653:139866701:[+] chr18:67812858:67812901:[-] nonBSJ supported CDS

circRNA 5':UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCA 3'


            |||| ||||| || |||| |||| || || ||||||


target  3':UCGAG-AGAAGACAGU--AGGU-CAGACUCAAGUUAUC-CAAAGAAGGG 5'

 -29.60 2 RIC-seq
chrX:139866653:139866701:[+] chr18:67812859:67812901:[-] nonBSJ supported CDS

circRNA 5':UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCA 3'


            |||| ||||| || |||| |||| || || ||||||


target  3': CGAG-AGAAGACAGU--AGGU-CAGACUCAAGUUAUC-CAAAGAAGGG 5'

 -28.40 1 RIC-seq
chrX:139866654:139866701:[+] chr18:67812860:67812901:[-] nonBSJ supported CDS

circRNA 5':GCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCA 3'


            ||| ||||| || |||| |||| || || ||||||


target  3': GAG-AGAAGACAGU--AGGU-CAGACUCAAGUUAUC-CAAAGAAGGG 5'

 -25.20 1 RIC-seq
chrX:139866670:139866701:[+] chr18:67812873:67812901:[-] nonBSJ supported CDS

circRNA 5':CUCCACGUCUUCCAGCAUCUCUGUGUCUUCCA 3'


            |||| |||| || || ||||||


target  3': AGGU-CAGACUCAAGUUAUC-CAAAGAAGGG 5'

 -17.70 1 RIC-seq
chrX:139866688:139866708:[+] chr18:67812861:67812881:[-] nonBSJ supported CDS

circRNA 5': CUCUG-UGUCUUCCAGCAUCUU 3'


            |||| |||| ||||| |||


target  3':AGAGAAGACAGUAGGUC--AGAC 5'

 -18.10 15 RIC-seq
chrX:139866689:139866708:[+] chr18:67812862:67812881:[-] nonBSJ supported CDS

circRNA 5': UCUG-UGUCUUCCAGCAUCUU 3'


            ||| |||| ||||| |||


target  3':GAGAAGACAGUAGGUC--AGAC 5'

 -15.20 2 RIC-seq