Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865351:139865429:[+]	chr11:46799784:46799845:[-]	nonBSJ supported	CDS	circRNA 5':GCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGA 3' \|\| \|\| :\|\| \|\|\|:\|\|\|\| \|\|\| ::\|\|\|\|\|\|\|: \|\|\| :\|\| \|\|\| \|\|\|\| \|\|:\| \|\|\|: target 3':GGU-GAAGUAGAUCCGGAAGAA-----AGGAUUAGAAGGUU----AAGAAUAGU-GGU---UAGAA-UCUAU--GGUUG 5'	-40.50	1	RIC-seq
chrX:139865355:139865429:[+]	chr11:46799780:46799845:[-]	nonBSJ supported	CDS	circRNA 5': CUGU------GUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGA 3' \|\|\|: :\|\| \|\|\|:\|\|\|\| \|\|\| ::\|\|\|\|\|\|\|: \|\|\| :\|\| \|\|\| \|\|\|\| \|\|:\| \|\|\|: target 3':GGACGGUGAAGUAGAUCCGGAAGAA-----AGGAUUAGAAGGUU----AAGAAUAGU-GGU---UAGAA-UCUAU--GGUUG 5'	-40.80	1	RIC-seq
chrX:139866618:139866649:[+]	chr11:46842752:46842794:[-]	nonBSJ supported	CDS	circRNA 5':CCAGG-UCUUCCA------G-CAUCUCCAG--G-GCUUCCAGC 3' \|\|\| \|\| \|\|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| target 3':CGUCAAAGUUGGUGAGUGACAGUAGAGGGUAACACGAAGGUCC 5'	-30.30	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr11:46799780:46799845:[-]	target	-	chr11:46799797-46799798	G>T	LICA-CN	ICGC
chr11:46799784:46799845:[-]	target	-	chr11:46799797-46799798	G>T	LICA-CN	ICGC
chr11:46842752:46842794:[-]	target	-	chr11:46842770-46842771	T>A	COCA-CN	ICGC