Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865722:139865750:[+] chr3:142268342:142268373:[-] nonBSJ supported CDS

circRNA 5':AUCUAGUUCUUCCA--GAAAAAUC-UAGAUCU 3'


            ||||:||| || ||| :|||:|


target  3':AAGAUUAAGUAGAAACCUUGUUCUUGUCUGGU 5'

 -14.80 11 RIC-seq
chrX:139865741:139865788:[+] chr3:142268342:142268377:[-] nonBSJ supported CDS

circRNA 5':AUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGA-AAGAAAU--CCAGGUC 3'


            ||||: || :|||| ||||| |||::|


target  3':AAGAUUAAG---------------UAGAAACCUUGUUCUUGUCUGGUUUAC 5'

 -12.20 1 RIC-seq
chrX:139866630:139866644:[+] chr3:142257356:142257373:[-] nonBSJ supported CDS

circRNA 5': GCA---UCUCCAGGGCUU 3'


            ||| ||| :||||


target  3':ACGUCAAAGAAA-UCCGAC 5'

 -10.40 21 RIC-seq
chrX:139866632:139866644:[+] chr3:142257362:142257373:[-] nonBSJ supported CDS

circRNA 5':AUCUCCAGGGCUU 3'


            ||| :||||


target  3':AAGAAA-UCCGAC 5'

 -7.70 10 RIC-seq
chrX:139866639:139866657:[+] chr3:142257352:142257373:[-] nonBSJ supported CDS

circRNA 5':GGGCUUCCAGCAUCU----GCUC 3'


            |||| ||| ||| |||


target  3':AUCGAC-GUCAAAGAAAUCCGAC 5'

 -9.40 1 RIC-seq
chrX:139866641:139866657:[+] chr3:142257353:142257373:[-] nonBSJ supported CDS

circRNA 5': GCUUCCAGCAUCU----GCUC 3'


            ||| ||| ||| |||


target  3':UCGAC-GUCAAAGAAAUCCGAC 5'

 -7.90 1 RIC-seq
chrX:139866651:139866663:[+] chr3:142257354:142257367:[-] nonBSJ supported CDS

circRNA 5':UCUGCUCG-UCUUC 3'


            |||| ||||


target  3':CGACGUCAAAGAAA 5'

 -7.60 1 RIC-seq
chrX:139866682:139866704:[+] chr3:142257352:142257372:[-] nonBSJ supported CDS

circRNA 5':CAGCAUCUCUGUGUCUUCCAGCA 3'


            ||| || |||| ||


target  3':AUCGACGU--CAAAGAAAUCCGA 5'

 -6.50 1 RIC-seq