5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866352:139866386:[+] | chr1:39471144:39471209:[+] | nonBSJ supported | 3UTR |
circRNA 5': GUCU--------UC-CAGCAAA--------------------UCCACGUCUUCC-AACAAAGCCA 3' |||: || ||| ||| ||||| ||:|| |||| || | target 3':CCAGGACUUGUUCAGUGUCAUUUUUUAUUUACAUAUGAAUUGAAGGUGGAGGAGUUUUGUCUCCGA 5' |
-20.00 | 29 | RIC-seq |
| chrX:139866354:139866395:[+] | chr1:39470544:39470592:[+] | nonBSJ supported | 3UTR |
circRNA 5': CUUCC-AGCAAAUCCACG---UCU----UCCAACAAAG-CCAUGUCUUCCA 3' ||:|| ||| ||:|| ||: |||| || || |||| target 3':CGAGGGUUCGGUUGGGACUACGAGGACCGAGGUCCCAUCUGGAA---AAGGG 5' |
-22.70 | 27 | RIC-seq |
| chrX:139866358:139866384:[+] | chr1:39471146:39471171:[+] | nonBSJ supported | 3UTR |
circRNA 5':CAGCAAAUCCACGUCUUCC-AACAAAGC 3' |:| ||||| ||:|| |||| || target 3':AUUGA--AGGUGGAGGAGUUUUGUCUCC 5' |
-18.30 | 1 | RIC-seq |
| chrX:139866383:139866394:[+] | chr1:39471155:39471166:[+] | nonBSJ supported | 3UTR |
circRNA 5':GCCAUGUCUUCC 3' |||: ||:|| target 3':AGGUGGAGGAGU 5' |
-13.00 | 1 | RIC-seq |