Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865938:139865954:[+] chr1:201435210:201435228:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCUGAAGAUCCA-CG 3'


            ||||| || |||| ||


target  3':UAAGGAAGUCGAGGUCGCG 5'

 -13.90 1 RIC-seq
chrX:139865984:139866027:[+] chr1:201435207:201435237:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAUGUCUUCCAGUAACCUCCCAGU-CUUCCAGAAAAUCCACG 3'


            ||||| :||| ||| || ||||: |:||| |||||


target  3': AGGUAAGGAA-GUC----GA-GGUCGCGGAGG------AGGUG 5'

 -30.00 1 RIC-seq
chrX:139865984:139866027:[+] chr1:201435207:201435238:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAUGUCUUCCAGUAACCUCCCAGU-CUUCCAGAAAAUCCACG 3'


            ||||| :||| ||| || ||||: |:||| |||||


target  3': AGGUAAGGAA-GUC----GA-GGUCGCGGAGG------AGGUGU 5'

 -29.80 9 RIC-seq