Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865888:139865928:[+] chr5:98131873:98131913:[+] nonBSJ supported 3UTR

circRNA 5': GUCAAUCCACAUCUUCCGGAAAAAAUCCAGG---UCUUCCAGCC 3'


            |:| |||||||| || || |: ||||| |||


target  3':UCGGAUAGGUGUACAA--CCAUACU--GGACUUUAAGAAGAUCGA 5'

 -22.80 3 RIC-seq
chrX:139865891:139865928:[+] chr5:98131873:98131909:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCACAUCUUCCGGAAAAAAUCCAGG---UCUUCCAGCC 3'


            |||||||| || || |: ||||| |||


target  3':AUAGGUGUACAA--CCAUACU--GGACUUUAAGAAGAUCGA 5'

 -19.30 1 RIC-seq
chrX:139866251:139866271:[+] chr5:98129029:98129048:[+] nonBSJ supported CDS

circRNA 5':AACAAAGCCAUGUCUUCCAGA 3'


            ||| |||| ||||| |||


target  3':CUGUACCGGUCCAGAA-GUCC 5'

 -18.00 3 RIC-seq
chrX:139866256:139866265:[+] chr5:98129009:98129019:[+] nonBSJ supported CDS

circRNA 5':AGCCAU-GUCU 3'


            || |||


target  3':CCGUUCCCAGU 5'

 -3.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865888:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865891:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC