Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865635:139865640:[+] chr5:98131358:98131363:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCU 3'


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target  3':ACCAGU 5'

 -6.50 1 RIC-seq
chrX:139865635:139865643:[+] chr5:98131353:98131363:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCU-UCC 3'


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target  3':ACCAGUCAGGC 5'

 -9.10 36 RIC-seq
chrX:139865635:139865666:[+] chr5:98131338:98131363:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCU-UCCAUCAAAUACAGAUCU--UCCAGCUA 3'


            |||| ||| || ||| |||||||


target  3':ACCAGUCAGGCAG---------AGAUCAGGUCGAA 5'

 -21.30 35 RIC-seq
chrX:139865651:139865666:[+] chr5:98131338:98131360:[+] nonBSJ supported 3UTR

circRNA 5':ACAGAUCU--------UCCAGCUA 3'


            ||| ||: |||||||


target  3':AGUC-AGGCAGAGAUCAGGUCGAA 5'

 -14.30 33 RIC-seq