Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866023:139866055:[+] chr17:39847643:39847678:[+] nonBSJ supported 3UTR

circRNA 5':CCACG-UCUUCCCAACA---AUCCA--AGUCUUCCGGAU 3'


            |||: ||| |||| || || ||||


target  3':AGUGUAAGACUACAAACCUGUAGGGAAUC-GAU--CCUA 5'

 -10.70 1 RIC-seq
chrX:139866023:139866057:[+] chr17:39847641:39847678:[+] nonBSJ supported 3UTR

circRNA 5':CCACG-UCUUCCCAACA---AUCCA--AGUCUUCCGGAUAA 3'


            |||: ||| |||| || || |||||


target  3':AGUGUAAGACUACAAACCUGUAGGGAAUC-GAU--CCUAUA 5'

 -12.80 11 RIC-seq
chrX:139866190:139866213:[+] chr17:39846366:39846390:[+] nonBSJ supported CDS

circRNA 5':AGCUUC-CAAAAAAUCCGGGU-CUUC 3'


            ||||| | |||||:| ||:


target  3':AUGAAGAGGUAUA-AGGCCUACGAGU 5'

 -17.00 24 RIC-seq