Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865947:139865996:[+] chr11:66571547:66571586:[+] nonBSJ supported CDS

circRNA 5':GAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCC 3'


            ||| |||:|||: || |||||| |||| |||:||||||


target  3':AUAGUCA-AGAGGGUUGUUCAGGUAC----GGUC-----GGUGCAGAAGU 5'

 -37.70 13 RIC-seq
chrX:139866188:139866267:[+] chr11:66571547:66571603:[+] nonBSJ supported CDS

circRNA 5':AUAGCUUCCAAAAAAUCCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUC 3'


            ||||| |:||| || ||| || |||:|||:|||||||| |:| |||||:||||||


target  3':CGUCGACGAC--------CUCAG----UCA--UAGUCA-AGAGGGUUGUUCAGGUACGG---------UCGGUGCAGAAGU 5'

 -55.50 7 RIC-seq
chrX:139866205:139866267:[+] chr11:66571547:66571593:[+] nonBSJ supported CDS

circRNA 5':CGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUC 3'


            |:||| || ||| || |||:|||:|||||||| |:| |||||:||||||


target  3': CUCAG----UCA--UAGUCA-AGAGGGUUGUUCAGGUACGG---------UCGGUGCAGAAGU 5'

 -53.80 1 RIC-seq
chrX:139866205:139866267:[+] chr11:66571547:66571594:[+] nonBSJ supported CDS

circRNA 5':CGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUC 3'


            |:||| || ||| || |||:|||:|||||||| |:| |||||:||||||


target  3':CCUCAG----UCA--UAGUCA-AGAGGGUUGUUCAGGUACGG---------UCGGUGCAGAAGU 5'

 -54.60 7 RIC-seq
chrX:139866231:139866267:[+] chr11:66571547:66571574:[+] nonBSJ supported CDS

circRNA 5':CCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUC 3'


            ||:|||||||| |:| |||||:||||||


target  3': GUUGUUCAGGUACGG---------UCGGUGCAGAAGU 5'

 -37.70 1 RIC-seq
chrX:139866232:139866268:[+] chr11:66571548:66571575:[+] nonBSJ supported CDS

circRNA 5': CAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUCC 3'


            ||:|||||||| |:| |||||:||||||


target  3':GGUUGUUCAGGUACGG---------UCGGUGCAGAAG 5'

 -39.50 1 RIC-seq
chrX:139866232:139866271:[+] chr11:66571546:66571575:[+] nonBSJ supported CDS

circRNA 5': CAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUCCAGA 3'


            ||:|||||||| |:| |||||:||||| |||


target  3':GGUUGUUCAGGUACGG---------UCGGUGCAGAA-GUC 5'

 -40.20 10 RIC-seq