5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866600:139866646:[+] | chr9:127781135:127781162:[-] | nonBSJ supported | CDS |
circRNA 5':CCAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCC 3' ||||:|:| |||||||| |||||:| target 3': GUACGGGAC---------------AAGGUCGUUAC---CCCGAGGA 5' |
-28.60 | 1 | RIC-seq |
| chrX:139866602:139866658:[+] | chr9:127781106:127781161:[-] | nonBSJ supported | CDS |
circRNA 5':AUGUCUUCCUAUAUCUCCAGGUCUUCCAG-CAUCUCCAGGGCUUCCAGCAUCU--GCUCG 3' |||| || |||:: ||: ||| :|| | |||||||| |||| target 3':CGCAGUCGGUCUCUGUUGA-CAGGGUGUUAGUACGGGA--C-AAGGUCGUUACCCCGAGG 5' |
-34.30 | 42 | RIC-seq |
| chrX:139866603:139866658:[+] | chr9:127781107:127781161:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCUUCCUAUAUCUCCAGGUCUUCCAG-CAUCUCCAGGGCUUCCAGCAUCU--GCUCG 3' ||| || |||:: ||: ||| :|| | |||||||| |||| target 3':GCAGUCGGUCUCUGUUGA-CAGGGUGUUAGUACGGGA--C-AAGGUCGUUACCCCGAGG 5' |
-34.30 | 1 | RIC-seq |
| chrX:139866607:139866646:[+] | chr9:127781125:127781162:[-] | nonBSJ supported | CDS |
circRNA 5':UUCCUAU-AUCU--CCAGGUCUUCCAGCAUCUCCAGGGCUUCC 3' |||:|: ||| || || ||||||| |||||:| target 3':CAGGGUGUUAGUACGGGACA--AGGUCGUUAC---CCCGAGGA 5' |
-34.10 | 1 | RIC-seq |
| chrX:139866629:139866666:[+] | chr9:127781105:127781149:[-] | nonBSJ supported | CDS |
circRNA 5':AGCAUCU-CCAG-GGC-----UUCCAGCAUC-UGCUCGUCUUCCAA 3' || || |||| |:| |:||| ||| |||:| ||||| target 3':ACGCAGUCGGUCUCUGUUGACAGGGUGUUAGUACGGGAC-AAGGUC 5' |
-32.10 | 1 | RIC-seq |