Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866213:139866247:[+] chr15:93568180:93568209:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGAAAUCCGUGUCUUCCAGCAAGU-CCACGUCU 3'


            ||| || |: ||:||| ||||| || ||||


target  3':UGUC----AGUCG-AGGAGGAGGUUCACGG-GCAGU 5'

 -26.20 13 RIC-seq
chrX:139866213:139866247:[+] chr15:93568181:93568209:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGAAAUCCGUGUCUUCCAGCAAGU-CCACGUCU 3'


            ||| || |: ||:||| ||||| || ||||


target  3':UGUC----AGUCG-AGGAGGAGGUUCACGG-GCAG 5'

 -26.20 1 RIC-seq
chrX:139866765:139866816:[+] chr15:93429401:93429427:[+] nonBSJ supported 5UTR

circRNA 5': CAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCC-AGUGUCUGCA 3'


            ||||||||| :|||||| |:|| |||


target  3':GGUUGCAGAG-------------------------UCAGAAGUUUUAC---CGUA 5'

 -22.80 9 RIC-seq
chrX:139866766:139866816:[+] chr15:93429401:93429426:[+] nonBSJ supported 5UTR

circRNA 5': AACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCC-AGUGUCUGCA 3'


            |||||||| :|||||| |:|| |||


target  3':GUUGCAGAG-------------------------UCAGAAGUUUUAC---CGUA 5'

 -19.60 1 RIC-seq
chrX:139865987:139866017:[+] chr15:93540535:93540578:[+] nonBSJ supported CDS

circRNA 5': CAUG-UC------UUCCAGUAACCUCCCA-----GUCUUCCAG 3'


            |||| || ::||||:||| :|||||||


target  3':GGUACAAGUAUUUAGGGGUCGUUGUCCGCUCUUAGUAGAAGGUG 5'

 -23.60 1 RIC-seq
chrX:139866002:139866026:[+] chr15:93540575:93540595:[+] nonBSJ supported CDS

circRNA 5':CCUCCCAGUCUUCCAGAAAAUCCAC 3'


            |||||||| ||||| |||


target  3':UGAGGGUCA-AAGGUAUC---GGUA 5'

 -21.80 1 RIC-seq
chrX:139866002:139866029:[+] chr15:93540573:93540595:[+] nonBSJ supported CDS

circRNA 5':CCUCCCAGUCUUCCAGAAAAUCCACGUC 3'


            |||||||| ||||| ||| ||


target  3':UGAGGGUCA-AAGGUAUC---GGUACA 5'

 -22.30 20 RIC-seq
chrX:139866002:139866070:[+] chr15:93540536:93540595:[+] nonBSJ supported CDS

circRNA 5':CCUCCCAGUCUUCCAGAAAAUCCACGUCUUCCCAACAAUCC-AAGUCUUCCGGAUAAUUUGG--------GUCUUCCU 3'


            |||||||| ||||| ||| || || ||:|| :||:| :||: || :||||||


target  3':UGAGGGUCA-AAGGUAUC---GGUACA-----------AGUAUUUAG-GGGUC-GUUGU-CCGCUCUUAGUAGAAGGU 5'

 -39.60 22 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:93540535:93540578:[+] target 1041269 chr15:93540550-93540551 C>T Developmental_and_epileptic_encephalopathy_94|not_provided ClinVar
chr15:93540535:93540578:[+] target 1067861 chr15:93540563-93540564 G>A Developmental_and_epileptic_encephalopathy_94 ClinVar
chr15:93540536:93540595:[+] target 1041269 chr15:93540550-93540551 C>T Developmental_and_epileptic_encephalopathy_94|not_provided ClinVar
chr15:93540536:93540595:[+] target 1067861 chr15:93540563-93540564 G>A Developmental_and_epileptic_encephalopathy_94 ClinVar
chr15:93540536:93540595:[+] target - chr15:93540594-93540595 G>T LICA-CN ICGC
chr15:93540573:93540595:[+] target - chr15:93540594-93540595 G>T LICA-CN ICGC
chr15:93540575:93540595:[+] target - chr15:93540594-93540595 G>T LICA-CN ICGC
chrX:139866765:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866766:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC