Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865596:139865602:[+] chr15:77470830:77470836:[-] nonBSJ supported 3UTR

circRNA 5':CCACGUC 3'


            |||:|


target  3':UGUGUAA 5'

 -4.20 1 RIC-seq
chrX:139865650:139865703:[+] chr15:77473590:77473638:[-] nonBSJ supported CDS

circRNA 5':UACAGA--------UCUUCCA-GCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCAC-CAA 3'


            ||||| :|||| :|||||| |||||| ||:|||| ||


target  3':UUGUCUUGGCCGGGGGAAGUAAUGAUUAGUGA--------------AGACAC-GAGGGUGAGUC 5'

 -31.00 14 RIC-seq
chrX:139865655:139865703:[+] chr15:77473603:77473638:[-] nonBSJ supported CDS

circRNA 5':AUCUUCCA-GCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCAC-CAA 3'


            ||||| :|||||| |||||| ||:|||| ||


target  3':GGGAAGUAAUGAUUAGUGA--------------AGACAC-GAGGGUGAGUC 5'

 -28.00 13 RIC-seq
chrX:139865656:139865703:[+] chr15:77473603:77473638:[-] nonBSJ supported CDS

circRNA 5': UCUUCCA-GCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCAC-CAA 3'


            ||||| :|||||| |||||| ||:|||| ||


target  3':GGGAAGUAAUGAUUAGUGA--------------AGACAC-GAGGGUGAGUC 5'

 -28.20 3 RIC-seq
chrX:139865656:139865703:[+] chr15:77473605:77473638:[-] nonBSJ supported CDS

circRNA 5':UCUUCCA-GCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCAC-CAA 3'


            |||| :|||||| |||||| ||:|||| ||


target  3': GAAGUAAUGAUUAGUGA--------------AGACAC-GAGGGUGAGUC 5'

 -26.50 1 RIC-seq
chrX:139866260:139866290:[+] chr15:77450972:77451003:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGACUAUCCAUGUCU----UCCAGAA 3'


            || ||||| :|| || ||| ||| ||


target  3':AAC-GAAGGGUUGUU--GUCAAGAACCUAGGGCUC 5'

 -13.80 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:77450972:77451003:[-] target - chr15:77451000-77451001 C>A EOPC-DE ICGC