Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865471:139865520:[+] chr3:123008634:123008680:[-] nonBSJ supported CDS

circRNA 5':CAUGU-CUUCCGGACAAUCCAUGU-CUUCCAAGAAGCUCCAAGUCUUCCAGU 3'


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target  3':CUACAUGAAGUAGACC-AGGUAGUCGAAGUAC---CGU--UUCAGCCGGUCAC 5'

 -25.10 1 RIC-seq
chrX:139865503:139865554:[+] chr3:123008626:123008679:[-] nonBSJ supported CDS

circRNA 5':AGCUCCAA---GU-CUUCCA---GUAAAUCAAGUCUUCCA-GCAAAUCCAGUCUUCCAGC 3'


            |||| || |||| || ||| || |||| |||| |||| ||||


target  3':ACGAGUAACUACAUGAAGUAGACCAGGUAG-UC-GAAGUACCGUU----UCAGCCGGUCA 5'

 -27.00 6 RIC-seq
chrX:139865833:139865848:[+] chr3:123008669:123008685:[-] nonBSJ supported CDS

circRNA 5': GUCAGUCAGUGUCUUC 3'


            ||| |:|||||:|||


target  3':UCAGCCGGUCACGGAAC 5'

 -20.80 3 RIC-seq
chrX:139865834:139865848:[+] chr3:123008670:123008685:[-] nonBSJ supported CDS

circRNA 5': UCAGUCAGUGUCUUC 3'


            || |:|||||:|||


target  3':CAGCCGGUCACGGAAC 5'

 -17.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:123008626:123008679:[-] target - chr3:123008651-123008652 C>T LINC-JP ICGC
chr3:123008634:123008680:[-] target - chr3:123008651-123008652 C>T LINC-JP ICGC