Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866687:139866749:[+] chr3:35833880:35833944:[+] nonBSJ supported CDS

circRNA 5':UCUCU---GUGUCUUCCAGCAUCUUCAUGUCUU-CCAACAACUACCCAGUCUUCCAU-CA--ACUGGCUC 3'


            |||| ||| || ||| ||:| |:| || ||| || ||| || |||||||


target  3':UGAGACUCCACCGACGA-CGU-GAGG-AUAAUCCGGAACCUUA-GGGACAACUGGUCUGUUCUGACCGA 5'

 -30.00 16 RIC-seq
chrX:139866691:139866749:[+] chr3:35833880:35833937:[+] nonBSJ supported CDS

circRNA 5':UGUGUCUUCCAGCAUCUUCAUGUCUU-CCAACAACUACCCAGUCUUCCAU-CA--ACUGGCUC 3'


            ||| || ||| ||:| |:| || ||| || ||| || |||||||


target  3':CCACCGACGA-CGU-GAGG-AUAAUCCGGAACCUUA-GGGACAACUGGUCUGUUCUGACCGA 5'

 -27.20 1 RIC-seq
chrX:139866726:139866748:[+] chr3:35833881:35833905:[+] nonBSJ supported CDS

circRNA 5':ACCCAGUCUUCCAU-CA--ACUGGCU 3'


            ||| || ||| || ||||||


target  3':AGGGACAACUGGUCUGUUCUGACCG 5'

 -18.60 1 RIC-seq
chrX:139866726:139866749:[+] chr3:35833880:35833905:[+] nonBSJ supported CDS

circRNA 5':ACCCAGUCUUCCAU-CA--ACUGGCUC 3'


            ||| || ||| || |||||||


target  3':AGGGACAACUGGUCUGUUCUGACCGA 5'

 -19.10 18 RIC-seq
chrX:139866727:139866749:[+] chr3:35833880:35833896:[+] nonBSJ supported CDS

circRNA 5':CCCAGUCUUCCAUCAACUGGCUC 3'


            |||| | |||||||


target  3':UGGUCUGUUC-----UGACCGA 5'

 -14.10 1 RIC-seq