Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865941:139865982:[+] chr2:30790936:30790976:[+] nonBSJ supported CDS

circRNA 5':CCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCAGAA 3'


            |||||| |||| ||| |||| ||| |||| |||


target  3':AGACUUC-AGGUAAAAAAAGUCGUUUACGUAAUGAAGCUCUG 5'

 -26.40 19 RIC-seq
chrX:139865941:139865992:[+] chr2:30790928:30790976:[+] nonBSJ supported CDS

circRNA 5':CCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUC 3'


            |||||| |||| ||| |||| ||| |||| ||| |||


target  3':AGACUUC-AGGUAAAAAAAGUCGUUUACGUAAUGAAGCUCUGAACG--ACAA 5'

 -27.10 15 RIC-seq
chrX:139865968:139866019:[+] chr2:30790936:30790983:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCAGUCUUCCAGAA 3'


            |||:| ||| ||| ||||| |||:|| |||| |||


target  3':AGUAUA-AAGA-CUUC-AGGUAAAAAAAGUCGUUUACGUAAU-GAAGCUCUG 5'

 -21.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:30790928:30790976:[+] target - chr2:30790934-30790935 A>G LINC-JP ICGC