Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865822:139865847:[+] chr17:72205971:72205992:[+] nonBSJ supported 3UTR

circRNA 5': CAGGUCUUCCAGUCAGUCAGUGUCUU 3'


            ||| |||||:||||| ||||||


target  3':UGUC---AAGGUUAGUCA--CACAGAC 5'

 -24.30 23 RIC-seq
chrX:139865827:139865847:[+] chr17:72205971:72205989:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAGUCAGUCAGUGUCUU 3'


            |||||:||||| ||||||


target  3':CAAGGUUAGUCA--CACAGAC 5'

 -23.40 1 RIC-seq
chrX:139865827:139865872:[+] chr17:72205947:72205989:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUC-CA-CCA 3'


            |||||:||||| |||||| || :|||| | ||


target  3':CAAGGUUAGUCA--CACAGACCAAGUAA--AGUCAAGGAAGUGACGG 5'

 -27.50 1 RIC-seq
chrX:139865827:139865877:[+] chr17:72205942:72205989:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUC-CA-CCAAAUCC 3'


            |||||:||||| |||||| || :|||| | |||||:|


target  3':CAAGGUUAGUCA--CACAGACCAAGUAA--AGUCAAGGAAGUGACGGUUUGG 5'

 -33.40 20 RIC-seq
chrX:139865872:139865889:[+] chr17:72205983:72205996:[+] nonBSJ supported 3UTR

circRNA 5':AAAUCCAGGUCUUCCAGU 3'


            ||| ||| |||||:


target  3':AUUAUGUC---AAGGUU 5'

 -7.10 1 RIC-seq
chrX:139865885:139865897:[+] chr17:72205984:72205992:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUCAAUCCAC 3'


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target  3':UGUCA---AGGU 5'

 -6.90 1 RIC-seq