Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865726:139865737:[+] chr10:46121542:46121555:[-] nonBSJ supported CDS

circRNA 5':AGUUCUU--CCAGA 3'


            |:||:: ||||


target  3':ACGAGGGCCGGUCA 5'

 -10.80 1 RIC-seq
chrX:139865726:139865748:[+] chr10:46121542:46121565:[-] nonBSJ supported CDS

circRNA 5':AGUUCUU--CCAGAAAAAUCUAGAU 3'


            |:||:: |||| |||


target  3':ACGAGGGCCGGUCACUCCGU-UCUU 5'

 -10.90 1 RIC-seq
chrX:139865748:139865766:[+] chr10:46121543:46121557:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGUCAAUCAGUGU 3'


            ||:|| |: |||||


target  3':CGAGGGCCG----GUCACU 5'

 -11.70 1 RIC-seq
chrX:139865748:139865778:[+] chr10:46121543:46121568:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGUCAAUCAGUGUCUUCCAGAAAGA 3'


            ||:|| |: ||||| | |||||:


target  3':CGAGGGCCG----GUCACUCC-GUUCUUUUG 5'

 -14.90 2 RIC-seq
chrX:139865762:139865815:[+] chr10:46121540:46121567:[-] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAA 3'


            ||| ||:|| ||: ||||| | |||||


target  3':ACAC-GAGGG-------------CCG------------GUCACUCC-GUUCUUUU 5'

 -15.70 1 RIC-seq
chrX:139865762:139865817:[+] chr10:46121540:46121568:[-] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGA 3'


            ||| ||:|| ||: ||||| | |||||:


target  3':ACAC-GAGGG-------------CCG------------GUCACUCC-GUUCUUUUG 5'

 -16.90 11 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:46121540:46121567:[-] target - chr10:46121543-46121544 G>T LICA-CN ICGC
chr10:46121540:46121567:[-] target - chr10:46121549-46121550 G>C EOPC-DE ICGC
chr10:46121540:46121568:[-] target - chr10:46121543-46121544 G>T LICA-CN ICGC
chr10:46121540:46121568:[-] target - chr10:46121549-46121550 G>C EOPC-DE ICGC
chr10:46121542:46121555:[-] target - chr10:46121543-46121544 G>T LICA-CN ICGC
chr10:46121542:46121555:[-] target - chr10:46121549-46121550 G>C EOPC-DE ICGC
chr10:46121542:46121565:[-] target - chr10:46121543-46121544 G>T LICA-CN ICGC
chr10:46121542:46121565:[-] target - chr10:46121549-46121550 G>C EOPC-DE ICGC
chr10:46121543:46121557:[-] target - chr10:46121549-46121550 G>C EOPC-DE ICGC
chr10:46121543:46121568:[-] target - chr10:46121549-46121550 G>C EOPC-DE ICGC