Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865559:139865591:[+] chr4:87967994:87968023:[+] nonBSJ supported CDS

circRNA 5':ACUGGUCUUCCACCAAAUCCAGAUCUUCCAGGA 3'


            |||| ||| ||||


target  3':CGACCUACCUUACGACGAGGGAAACA--GUCC 5'

 -12.90 1 RIC-seq
chrX:139865559:139865593:[+] chr4:87967991:87968023:[+] nonBSJ supported CDS

circRNA 5':ACUGGUCUUCCACCAAAUCCAGAUCUUCCAGGAAA 3'


            |||| ||| ||||||


target  3':CGACCUACCUUACGACGAGGGAAACA--GUCCUUA 5'

 -15.40 24 RIC-seq
chrX:139865559:139865593:[+] chr4:87967992:87968023:[+] nonBSJ supported CDS

circRNA 5':ACUGGUCUUCCACCAAAUCCAGAUCUUCCAGGAAA 3'


            |||| ||| ||||||


target  3':CGACCUACCUUACGACGAGGGAAACA--GUCCUU 5'

 -15.40 1 RIC-seq
chrX:139865588:139865612:[+] chr4:87967991:87968017:[+] nonBSJ supported CDS

circRNA 5':AGGAAAAUCCACGUCUUC--CAGGAAA 3'


            |||| :||| ||||||


target  3':ACCUUACGACGAGGGAAACAGUCCUUA 5'

 -13.20 1 RIC-seq
chrX:139866021:139866038:[+] chr4:87968806:87968822:[+] nonBSJ supported Exon

circRNA 5':AUCCACGUCUUCCCAACA 3'


            |||||:||:||| ||


target  3':GGGGUGUAGGAGGCCUG 5'

 -20.80 1 RIC-seq