Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865861:139865882:[+] chr18:32916595:32916613:[-] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCACCAAAUCCAGGUC 3'


            ||||||| || |||| ||||


target  3':AUAGAAGG-GG-UUAGUUCCA 5'

 -20.20 4 RIC-seq
chrX:139866769:139866812:[+] chr18:32917391:32917445:[-] nonBSJ supported CDS

circRNA 5':GUCUCCAGUGUGCUGAUCUUCUG-------ACAUUCA-GGU-CUUCC----AGUGUC 3'


            ||||||||||| ||: :|||| ||| || |||| |:||:


target  3':AAGAGGUCACAC--CUGAGAGACCACAACGUGUUCUUACCUUGAAGCCGACUUACGA 5'

 -30.50 1 RIC-seq
chrX:139866769:139866816:[+] chr18:32917391:32917445:[-] nonBSJ supported CDS

circRNA 5':GUCUCCAGUGUGCUGAUCUUCUG-------ACAUUCA-GGU-CUUCCAGUGUCUGCA 3'


            ||||||||||| ||: :|||| ||| || |||| || |||


target  3':AAGAGGUCACAC--CUGAGAGACCACAACGUGUUCUUACCUUGAAGCCGACUUACGA 5'

 -35.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866769:139866812:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866769:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC