Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865993:139866054:[+] chr19:579517:579589:[+] nonBSJ supported 5UTR

circRNA 5':UUCCAGUAACCUC-----C-CAGUC-UUC------CAGAAAAUCCACGUCUUCCCAACAAUCCAA-GUCUUC--CGGA 3'


            ||| || ||||| | | ||| ||| ||| :|||| |||| |||||| |||


target  3':CGGGACACUGGAGACACCGCGACAGUAAGUUCCUCGUCCACUCCUCAUAGAACCUC-----GGUUCCAGAAGAUGCCA 5'

 -26.00 1 RIC-seq
chrX:139865994:139866054:[+] chr19:579517:579587:[+] nonBSJ supported 5UTR

circRNA 5':UCCAGUAACCUC-----C-CAGUC-UUC------CAGAAAAUCCACGUCUUCCCAACAAUCCAA-GUCUUC--CGGA 3'


            || || ||||| | | ||| ||| ||| :|||| |||| |||||| |||


target  3': GGACACUGGAGACACCGCGACAGUAAGUUCCUCGUCCACUCCUCAUAGAACCUC-----GGUUCCAGAAGAUGCCA 5'

 -24.40 1 RIC-seq
chrX:139865997:139866054:[+] chr19:579517:579585:[+] nonBSJ supported 5UTR

circRNA 5':AGUAACCUC-----C-CAGUC-UUC------CAGAAAAUCCACGUCUUCCCAACAAUCCAA-GUCUUC--CGGA 3'


            || ||||| | | ||| ||| ||| :|||| |||| |||||| |||


target  3':ACACUGGAGACACCGCGACAGUAAGUUCCUCGUCCACUCCUCAUAGAACCUC-----GGUUCCAGAAGAUGCCA 5'

 -23.40 1 RIC-seq