Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865459:139865492:[+]	chr20:13998105:13998159:[+]	nonBSJ supported	Intron	circRNA 5':UUCCAGACAAU--CC-AUGUCUUCC--GGACA-------------------AUCCAUG 3' \|\|\| \|\|\|\| \|\| \|\|\| \|:\|\|\| \|\|\|\|\|: target 3':UGGGA--GUUAUUGGAUACUUAUUGAACUUGUAUUACCUCUGUAUACUUUUUAGGUG 5'	-11.60	1	RIC-seq
chrX:139865499:139865518:[+]	chr20:13998146:13998164:[+]	nonBSJ supported	Intron	circRNA 5':AAGAAGCUC-CAAGUCUUCCA 3' \|:\|\|:\|:\| \|\|\| \|\| target 3':AUUUUUGGGAGUUAUU--GGA 5'	-10.60	1	RIC-seq
chrX:139865878:139865923:[+]	chr20:15295551:15295589:[+]	nonBSJ supported	Intron	circRNA 5':AGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUC 3' \|\|:\|\| \|\| \|\|\|\|\| \|\|\| \|\| \|\| \|\|\|\|\|\|\| target 3':ACCGGA---UC-GUUAGUCGUACUCAA-CUAUCG-AGUUCCAGAA 5'	-22.50	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865878:139865923:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC