Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866501:139866534:[+] chr7:25160085:25160114:[-] nonBSJ supported 3UTR

circRNA 5':CCAGAAAAUCCACGUCUUCCAACCAAGCC-AUGUC 3'


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target  3': GUCAUC--GGUGAUC--GGUGAACACGGAUACAU 5'

 -15.40 11 RIC-seq
chrX:139866501:139866557:[+] chr7:25160085:25160136:[-] nonBSJ supported 3UTR

circRNA 5':CCAGAAAAUCCACGUCUUCCAACCAAGCC-AUGUCUUCCAGAAAAUCCACGUCUUCCA 3'


            ||| |||| ||| ||| |||| ||||| ||| |


target  3': GUCAUC--GGUGAUC--GGUGAACACGGAUACAUUUAAA-UUUUAUUUUAUGAAAGA 5'

 -15.70 1 RIC-seq
chrX:139866501:139866559:[+] chr7:25160085:25160139:[-] nonBSJ supported 3UTR

circRNA 5':CCAGAAAAUCCACGUCUUCCAACCAAGCC-AUGUCUUCCAGAAAAUCCACGUC-UUCCAGA 3'


            ||| |||| ||| ||| |||| ||||| | ||| ||


target  3': GUCAUC--GGUGAUC--GGUGAACACGGAUACAUUUAAA-UUUUAUUUUAUGAAAGAUCA 5'

 -16.00 8 RIC-seq