Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866304:139866334:[+]	chr10:64927548:64927582:[-]	nonBSJ supported	3UTR	circRNA 5':CCUCAAAUC-CAUA---GCUUCCGAAAAAUCCAGG 3' \| \|\|\|\|: \|\|\|\| :\|\| \|\| \|\|\| target 3':AGUGUUUGUAGUAUAUGUGAUAUUAUGUUUUGUCG 5'	-7.70	1	RIC-seq
chrX:139866332:139866362:[+]	chr10:64927540:64927583:[-]	nonBSJ supported	3UTR	circRNA 5':AGGUC--UUC-CAGGAAAUCCGUGU-CUUC-----------CAGCA 3' \|\|: \|\|\| \|\|:: \|\| \|:\|:\| \| \|\|\|\| target 3':ACCGUAAAAGUGUUUG-UA-GUAUAUGUGAUAUUAUGUUUUGUCGA 5'	-10.00	12	RIC-seq
chrX:139865746:139865796:[+]	chr10:64966743:64966783:[-]	nonBSJ supported	CDS	circRNA 5':GAUCUUCCAGUCAAUCAGUGUCUUCC-AGAAAGAAAUCCAGGUCUUC--CAGUC 3' \|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|:\|\|\| \|\|\|\| target 3': UAGAAGA--AGAC--UCACAGACCACUC--------GGUCCGGAAAAAGUCAA 5'	-28.00	13	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866304:139866334:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC