Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865809:139865851:[+]	chr16:78011627:78011663:[+]	nonBSJ supported	3UTR	circRNA 5':CCAGAAAGAAAUCCAGGUCUUC-CAGUCA-GUCAGUGUCUUCCAG 3' \|\|\| \|\|\|\| \|\| \|\|\| \|\|\|:\| \|\|\| ::\|\|\|\|\|\|\| target 3':UGUC-UUCU-------CAAAAGAGUCGGCCCAGGAGUAGAAGGUU 5'	-27.50	1	RIC-seq
chrX:139865878:139865906:[+]	chr16:78011627:78011657:[+]	nonBSJ supported	3UTR	circRNA 5':AGGUCUUC-CAGUCAA-UCCACAUCUUCCGG 3' \|\|\| \|\|\| \|\|\|:\| \|\|\| \|\|\|\|\|\|\|\|: target 3':CUCAAAAGAGUCGGCCCAGGAGUAGAAGGUU 5'	-27.20	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr16:78011627:78011657:[+]	target	-	chr16:78011647-78011648	T>A	RECA-EU	ICGC
chr16:78011627:78011663:[+]	target	-	chr16:78011647-78011648	T>A	RECA-EU	ICGC
chrX:139865878:139865906:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC