Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866169:139866210:[+] chr5:73931401:73931446:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCCCUUAAAUCUAUA-GCUU--CCAAAAAAUCCG-GGUC 3'


            |||||:|||| || ||| |||| ||||


target  3':AGACAGGAGGGUCUUCCUUCUCCCGUACCGGUCAAA-AGGCUCCAGC 5'

 -29.60 1 RIC-seq
chrX:139866169:139866218:[+] chr5:73931401:73931455:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCCCUUAAAUCUAUA-GCUU--CCAAAAAAUCCG-GGUCUU-C-CAGGA 3'


            |||||:|||| || ||| |||| |||| | |||:


target  3':AGACAGGAGGGUCUUCCUUCUCCCGUACCGGUCAAA-AGGCUCCAGCCCGUGUCUC 5'

 -32.40 1 RIC-seq
chrX:139866169:139866236:[+] chr5:73931401:73931470:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCCCUUAAAUCUAUA-GCUU--CCAAAAAAUCCG-GGUCUU-C-CAGGAAAUCCGUGUCUUCCAGCA 3'


            |||||:|||| || ||| |||| |||| | |||: || |: || |


target  3':AGACAGGAGGGUCUUCCUUCUCCCGUACCGGUCAAA-AGGCUCCAGCCCGUGUCUCCGAC-CAAUGGU-GUGG 5'

 -35.20 1 RIC-seq
chrX:139866169:139866236:[+] chr5:73931401:73931471:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCCCUUAAAUCUAUA-GCUU--CCAAAAAAUCCG-GGUCUU-C-CAGGAAAUCCGUGUCUUCCAGCA 3'


            |||||:|||| || ||| |||| |||| | |||: || |: || |


target  3':AGACAGGAGGGUCUUCCUUCUCCCGUACCGGUCAAA-AGGCUCCAGCCCGUGUCUCCGAC-CAAUGGU-GUGGC 5'

 -35.00 17 RIC-seq
chrX:139866746:139866777:[+] chr5:73931685:73931709:[-] nonBSJ supported CDS

circRNA 5': GCUCAAUAUCCAUGUCUUCCAACGUCUCCAGU 3'


            ||: :|||| ||| ||||||||:


target  3':UCGGAAAGUAGG---AGA------CAGAGGUCGA 5'

 -21.80 1 RIC-seq
chrX:139866746:139866779:[+] chr5:73931685:73931718:[-] nonBSJ supported CDS

circRNA 5': GCUCAAUAUCCA-UGUCUUCCAACGUCUCCAGUGU 3'


            ||: :|||| |||| |||| | ||| || ||


target  3':UCGGAAAGUAGGAGACAG-AGGUCG-AGAAGUGACC 5'

 -24.20 21 RIC-seq