Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866156:139866182:[+] chr1:86375646:86375690:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGAAAA-----------------UCCUUGUCUUCCCUUA 3'


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target  3':AGAGGGACGCCUGGAUCACCCGGACCUGAAGGUGCAAGAGGGAAA 5'

 -17.30 14 RIC-seq
chrX:139866405:139866413:[+] chr1:86591217:86591225:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCA 3'


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target  3':UCACAAGGC 5'

 -5.50 1 RIC-seq
chrX:139866421:139866431:[+] chr1:86591217:86591225:[-] nonBSJ supported CDS

circRNA 5':UGUGUCUUCCA 3'


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target  3':UCACA--AGGC 5'

 -7.00 8 RIC-seq
chrX:139866634:139866658:[+] chr1:86282503:86282533:[-] nonBSJ supported CDS

circRNA 5':CUCCAGGGCUUCCAG------CAUCUGCUCG 3'


            ||||||| |||| |||||||||


target  3':AAGGUCCCAAAGGACUUUACGGUAGACGAGG 5'

 -33.10 4 RIC-seq