Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865540:139865553:[+] chr19:7170608:7170626:[-] nonBSJ supported CDS

circRNA 5':AUCCAG-----UCUUCCAG 3'


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target  3':AAGGACUUUGAAGAAGGUA 5'

 -10.10 1 RIC-seq
chrX:139865540:139865567:[+] chr19:7170608:7170640:[-] nonBSJ supported CDS

circRNA 5':AUCCAG-----UCUUCCAGCAAUUACUGGUCUU 3'


            ||| ||||||| |||


target  3':AAGGACUUUGAAGAAGGUAGAACACCUAAAGAC 5'

 -11.40 13 RIC-seq
chrX:139865583:139865622:[+] chr19:7170607:7170640:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCUU 3'


            |||| ||| || ||||||| |||


target  3':CAAGGA-CUU-----UGAAGAAGGUAGAACACCUAAAGAC 5'

 -15.70 5 RIC-seq