Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865453:139865515:[+] chr10:32307250:32307303:[-] nonBSJ supported CDS

circRNA 5':CACAUCUUCCAGACAAUCCAUGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCC-AAGUCUU 3'


            || |||| || ||| |||:| |:|||| || || ||||||


target  3':UUG-AGAACAUC-----GGUCCAGGA--CUUGUUUCU--CAAACGCGUCCAACACAUUUCAGAC 5'

 -17.20 1 RIC-seq
chrX:139865456:139865515:[+] chr10:32307252:32307303:[-] nonBSJ supported CDS

circRNA 5':AUCUUCCAGACAAUCCAUGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCC-AAGUCUU 3'


            |||| || ||| |||:| |:|||| || || ||||||


target  3':GAGAACAUC-----GGUCCAGGA--CUUGUUUCU--CAAACGCGUCCAACACAUUUCAGAC 5'

 -16.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:32307250:32307303:[-] target - chr10:32307289-32307290 G>T LICA-CN ICGC
chr10:32307252:32307303:[-] target - chr10:32307289-32307290 G>T LICA-CN ICGC