Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865597:139865642:[+] chr18:25727689:25727740:[-] nonBSJ supported 5UTR

circRNA 5':CACGUCUUCCAGGAAAUCCAUGUCUUCCAAUA----AUUUCA----AGGUCUUC 3'


            ||:|||| ||||||||||| ||||| || |||||| |:|:||:


target  3':UUGUAGAA-GUCCUUUAGGU-CAGAACGUAUUACGCUAAAGUGGUCUUCGGAGA 5'

 -39.20 17 RIC-seq
chrX:139865597:139865648:[+] chr18:25727689:25727732:[-] nonBSJ supported 5UTR

circRNA 5':CACGUCUUCCAGGAAAUCCAUGUCUUCCAAUAAUUUCAAGGUCUUCCAUCAA 3'


            ||:|||| ||||||||||| ||||| | ||||| |:| || ||:||


target  3':UUGUAGAA-GUCCUUUAGGU-CAGAACG-UAUUACG---CUA-AA-GUGGUC 5'

 -36.50 18 RIC-seq
chrX:139865601:139865642:[+] chr18:25727692:25727740:[-] nonBSJ supported 5UTR

circRNA 5': UCUUCCAGGAAAUCCAUGUCUUCCAAUA----AUUUCA----AGGUCUUC 3'


            |||| ||||||||||| ||||| || |||||| |:|:||:


target  3':UAGAA-GUCCUUUAGGU-CAGAACGUAUUACGCUAAAGUGGUCUUCGGAGA 5'

 -34.20 1 RIC-seq