Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866577:139866629:[+] chr5:140059428:140059470:[-] nonBSJ supported 5UTR

circRNA 5':CUAAGCUAC--GUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAG-GUCUUCCA 3'


            |||||| ||||||| ||||: ||||:|| ||| || ||||


target  3':UAUUCGAACCUCAGAAGG-------GGUAUGAAAGGGUA-----GUCACA-AAGGA 5'

 -32.80 30 RIC-seq
chrX:139866579:139866629:[+] chr5:140059429:140059470:[-] nonBSJ supported 5UTR

circRNA 5': AAGCUAC--GUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAG-GUCUUCCA 3'


            ||||| ||||||| ||||: ||||:|| ||| || ||||


target  3':AUUCGAACCUCAGAAGG-------GGUAUGAAAGGGUA-----GUCACA-AAGGA 5'

 -31.40 1 RIC-seq
chrX:139865618:139865647:[+] chr5:140053881:140053904:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAAUAAUUUCAAGGUCUUC-CAUCA 3'


            ||:|||| |||||||||| | ||


target  3':AAGGAGGU-------GUUCCAGAAGAGAAGC 5'

 -24.60 5 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866577:139866629:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866579:139866629:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866577:139866629:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC