Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866022:139866036:[+] chr17:16284450:16284464:[+] nonBSJ supported 5UTR

circRNA 5':UCCACGUCUUCCCAA 3'


            |||||||: ||||


target  3':UGGUGCAGGUGGGUG 5'

 -21.60 8 RIC-seq
chrX:139865556:139865573:[+] chr17:16285724:16285740:[+] nonBSJ supported CDS

circRNA 5':AUUACUGGUCUUCCACCA 3'


            |:||||| | ||||||


target  3':CAGUGACCCG-AGGUGGA 5'

 -20.60 12 RIC-seq
chrX:139865563:139865610:[+] chr17:16285718:16285783:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCACCAAAUCCA-GAUCUU--CCA----------------------GGAAAAUCCACGUCUUCCAGGA 3'


            |:|||| ||| |||||| || || ||||| :|||||:


target  3':ACGGAAGAAA---UAGAACCUAGAACCGGAAGUGUAAAAGCUACCACAGUGACCCG--AGGUG---GAGGUCUC 5'

 -24.60 27 RIC-seq
chrX:139865564:139865610:[+] chr17:16285718:16285782:[+] nonBSJ supported CDS

circRNA 5': UCUUCCACCAAAUCCA-GAUCUU--CCA----------------------GGAAAAUCCACGUCUUCCAGGA 3'


            ||||| ||| |||||| || || ||||| :|||||:


target  3':CGGAAGAAA---UAGAACCUAGAACCGGAAGUGUAAAAGCUACCACAGUGACCCG--AGGUG---GAGGUCUC 5'

 -20.40 1 RIC-seq
chrX:139865582:139865610:[+] chr17:16285718:16285760:[+] nonBSJ supported CDS

circRNA 5': UCUUC-CA-----------------GGAAAAUCCACGUCUUCCAGGA 3'


            ||||| || || ||||| :|||||:


target  3':CGGAAGUGUAAAAGCUACCACAGUGACCCG--AGGUG---GAGGUCUC 5'

 -17.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:16285718:16285760:[+] target - chr17:16285719-16285720 T>C LAML-KR ICGC
chr17:16285718:16285782:[+] target - chr17:16285719-16285720 T>C LAML-KR ICGC
chr17:16285718:16285782:[+] target - chr17:16285770-16285771 A>G LAML-KR ICGC
chr17:16285718:16285783:[+] target - chr17:16285719-16285720 T>C LAML-KR ICGC
chr17:16285718:16285783:[+] target - chr17:16285770-16285771 A>G LAML-KR ICGC