Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865768:139865796:[+]	chr11:11971929:11971962:[+]	nonBSJ supported	5UTR	circRNA 5':UUCCAGAAAGAAAU--CCAGG--UCUUCCA-GUC 3' \|\|\|\|:\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\| target 3':UAGGUUUUUCUGUCACGGUCCUAAGAAGGUACAA 5'	-30.20	2	RIC-seq
chrX:139866060:139866108:[+]	chr11:11964041:11964105:[+]	nonBSJ supported	5UTR	circRNA 5':UGGGUCUUCCUGAAAAUCUA----------------CGUCUUCCAAAAAAGCCA----UGUCUUCCAGA 3' \|\|\| \|\|\|\|\|\|: \|\|: \|:\|\| \|\|\|\| :\|\|\| :\| \|:\|\|\|\|\| target 3': UCC-GAAGGAUGUCCAGGAAACUGAGAAAGUGUCAGUAGUAGGUGUAA-UGGUCUUAGC-GGAGGUCG 5'	-34.00	1	RIC-seq
chrX:139866060:139866108:[+]	chr11:11964042:11964105:[+]	nonBSJ supported	5UTR	circRNA 5':UGGGUCUUCCUGAAAAUCUA----------------CGUCUUCCAAAAAAGCCA----UGUCUUCCAGA 3' \|\|\| \|\|\|\|\|\|: \|\|: \|:\|\| \|\|\|\| :\|\|\| :\| \|:\|\|\|\|\| target 3': UCC-GAAGGAUGUCCAGGAAACUGAGAAAGUGUCAGUAGUAGGUGUAA-UGGUCUUAGC-GGAGGUC 5'	-33.80	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr11:11971929:11971962:[+]	target	-	chr11:11971932-11971933	A>T	LICA-CN	ICGC