Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865339:139865360:[+] chr2:64109683:64109702:[+] nonBSJ supported CDS

circRNA 5':GGGUUUCCGAUGGCACCUGUGU 3'


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target  3':ACCAAGGGUU-UGGUGGUAAC 5'

 -20.40 1 RIC-seq
chrX:139866119:139866141:[+] chr2:64084972:64084996:[+] nonBSJ supported CDS

circRNA 5': CUUCCAAUGGCC-UCCAGGUCUUC 3'


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target  3':CGAAGGCUUUAGGUAGGUCCAGAAA 5'

 -25.90 17 RIC-seq
chrX:139866313:139866337:[+] chr2:64084975:64084999:[+] nonBSJ supported CDS

circRNA 5':CAUAGCUUCCGAAAA--AUCCAGGUCU 3'


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target  3': UAUCGAAGGCUUUAGGUAGGUCCAG 5'

 -35.30 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866313:139866337:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC