Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866569:139866638:[+] chr1:23419612:23419676:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAA-----CUAAGCUACGUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUC-CAGGUCUUCCAGCAUC-UCCA 3'


            ||||| ||||:|| |||:|| ||||||| ||| |||| |||||| |||


target  3':UGAAGGCACCGGAGAUUUGAAUCAGGAGA--------GUACAGACGGAAACGACCUGUCCUU----UCGUAGAAGGG 5'

 -42.70 1 RIC-seq
chrX:139866634:139866666:[+] chr1:23419614:23419642:[-] nonBSJ supported CDS

circRNA 5':CUCCAGGGCUUCCAGCAUCUGCUCGUCUUC-CAA 3'


            ||| |||:|| || |||:|| ||


target  3':AAGGCACCGGAGAUUU--GAAU--CAGGAGAGU 5'

 -21.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:23419612:23419676:[-] target - chr1:23419640-23419641 T>A RECA-EU ICGC
chr1:23419612:23419676:[-] target - chr1:23419641-23419642 C>T RECA-EU ICGC
chr1:23419614:23419642:[-] target - chr1:23419640-23419641 T>A RECA-EU ICGC
chr1:23419614:23419642:[-] target - chr1:23419641-23419642 C>T RECA-EU ICGC
chrX:139866569:139866638:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC