Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865576:139865625:[+] chr2:145277531:145277567:[-] nonBSJ supported 5UTR

circRNA 5':UCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCUU--CCA 3'


            ||||| :|| ||:||| |||| ||


target  3':CGGUCUUUACCACUCU---------------UCUUUUUCGUACUUCUUCGGC 5'

 -13.60 30 RIC-seq
chrX:139865577:139865625:[+] chr2:145277533:145277567:[-] nonBSJ supported 5UTR

circRNA 5':CCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCUU--CCA 3'


            |||| :|| ||:||| |||| ||


target  3': GUCUUUACCACUCU---------------UCUUUUUCGUACUUCUUCGGC 5'

 -10.10 1 RIC-seq
chrX:139865606:139865625:[+] chr2:145277546:145277567:[-] nonBSJ supported 5UTR

circRNA 5':CAGGAAAUCCAUGUCUU--CCA 3'


            ||:||| |||| ||


target  3':UUCUUUUUCGUACUUCUUCGGC 5'

 -8.90 1 RIC-seq
chrX:139865941:139865955:[+] chr2:145277729:145277742:[-] nonBSJ supported 5UTR

circRNA 5':CCUGAAGAUCCACGU 3'


            |||| |||


target  3':UGACUGCACAAUGC 5'

 -5.40 20 RIC-seq
chrX:139865959:139865992:[+] chr2:145158790:145158832:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCAU----------GUCUU-CCAGAAAAUCCAUGUC 3'


            |||| |:||| ||| || ||:


target  3':AGUCUACCACAAAUAUAAACUUCCGGAACGGUGUG--AGACACGU 5'

 -10.20 14 RIC-seq
chrX:139865959:139866008:[+] chr2:145158790:145158857:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCAU----------GUCUU-CCAGAAAAUCCAUGU-------CUUCCAGUAACCU-C-CCA 3'


            |||| |:||| ||| || ||: ||| | :| |||| | ||


target  3':AGUCUACCACAAAUAUAAACUUCCGGAACGGUGUG--AGACACGUAAACUUGAACGCUAAUGGACGAGGA 5'

 -15.60 13 RIC-seq
chrX:139865970:139866013:[+] chr2:145158782:145158828:[-] nonBSJ supported CDS

circRNA 5':AUG-UCUUCCAGAAAAUCCAUGUCUUCCAGUAACCU--CC-CAGUCUU 3'


            || |||| |||| |:| ||| || || |||


target  3':CACAAGAAAGUCUACCACAAAUAUAAACUUCC-GGAACGGUGUGAGAC 5'

 -13.20 1 RIC-seq
chrX:139866256:139866281:[+] chr2:145187441:145187466:[-] nonBSJ supported CDS

circRNA 5':AGC-CAUGUCUUCCA--GACUAUCCAUGU 3'


            || ||:|| |||| ||||


target  3':CCGAGUGCACACCCCUCCUGA---GUACC 5'

 -11.40 1 RIC-seq
chrX:139866256:139866302:[+] chr2:145187441:145187491:[-] nonBSJ supported CDS

circRNA 5':AGC-CAUGUCUUCCA--GACUAUCCAUGUCUUC-CAGAAAAUC----CUUGUCUU 3'


            || ||:|| |||| |||| || | ||:||||


target  3':CCGAGUGCACACCCCUCCUGA---GUACCAACCCGUGUGAUCGACCUGAGCAGA 5'

 -15.90 24 RIC-seq
chrX:139866267:139866282:[+] chr2:145187432:145187450:[-] nonBSJ supported CDS

circRNA 5':CCAGA-CUAU-C-CAUGUC 3'


            |||| || | ||:||


target  3':UGUCUCGAACCGAGUGCAC 5'

 -7.40 1 RIC-seq
chrX:139866267:139866302:[+] chr2:145187432:145187491:[-] nonBSJ supported CDS

circRNA 5':CCAGA-CUAU-C-CAUGUCUUCCAGAAAAUC----------------------CUUGUCUU 3'


            |||| || | ||:|| || ||:||||


target  3':UGUCUCGAACCGAGUGCACACCCCUCCUGAGUACCAACCCGUGUGAUCGACCUGAGCAGA 5'

 -11.20 3 RIC-seq
chrX:139866767:139866800:[+] chr2:145187341:145187379:[-] nonBSJ supported CDS

circRNA 5':ACGUCUCCAGUGUGCU-----GAUCUUC-UGACAU-UCAGG 3'


            |:||| ||| | ||| :||||: || :|||


target  3':GGUAGAUGUCUC-CGAACAUCUUAGAGCAACAACACGGUC 5'

 -17.80 6 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:145158782:145158828:[-] target 807725 chr2:145158783-145158784 T>C Mowat-Wilson_syndrome ClinVar
chr2:145158782:145158828:[-] target 1076838 chr2:145158805-145158806 A>AT Mowat-Wilson_syndrome ClinVar
chr2:145158782:145158828:[-] target 1069634 chr2:145158808-145158809 T>A Mowat-Wilson_syndrome ClinVar
chr2:145158782:145158828:[-] target 2059735 chr2:145158823-145158824 AC>A Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158832:[-] target 1076838 chr2:145158805-145158806 A>AT Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158832:[-] target 1069634 chr2:145158808-145158809 T>A Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158832:[-] target 2059735 chr2:145158823-145158824 AC>A Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158832:[-] target 974618 chr2:145158831-145158832 C>T Inborn_genetic_diseases|Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158857:[-] target 1076838 chr2:145158805-145158806 A>AT Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158857:[-] target 1069634 chr2:145158808-145158809 T>A Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158857:[-] target 2059735 chr2:145158823-145158824 AC>A Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158857:[-] target 974618 chr2:145158831-145158832 C>T Inborn_genetic_diseases|Mowat-Wilson_syndrome ClinVar
chr2:145158790:145158857:[-] target 2030672 chr2:145158835-145158836 TG>T Mowat-Wilson_syndrome ClinVar
chr2:145187341:145187379:[-] target 1418131 chr2:145187353-145187354 GC>G Mowat-Wilson_syndrome ClinVar
chr2:145187341:145187379:[-] target 180207 chr2:145187377-145187378 CA>C Mowat-Wilson_syndrome ClinVar
chr2:145187432:145187450:[-] target 189278 chr2:145187433-145187434 CAGAGCTT>C Mowat-Wilson_syndrome ClinVar
chr2:145187432:145187491:[-] target 189278 chr2:145187433-145187434 CAGAGCTT>C Mowat-Wilson_syndrome ClinVar
chr2:145187432:145187491:[-] target 2824121 chr2:145187468-145187469 TG>T Mowat-Wilson_syndrome ClinVar
chr2:145187432:145187491:[-] target 801757 chr2:145187471-145187472 GCA>G Mowat-Wilson_syndrome ClinVar
chr2:145187432:145187491:[-] target 181758 chr2:145187477-145187478 TAGCTGGACTCGT>AAC Mowat-Wilson_syndrome ClinVar
chr2:145187441:145187491:[-] target 2824121 chr2:145187468-145187469 TG>T Mowat-Wilson_syndrome ClinVar
chr2:145187441:145187491:[-] target 801757 chr2:145187471-145187472 GCA>G Mowat-Wilson_syndrome ClinVar
chr2:145187441:145187491:[-] target 181758 chr2:145187477-145187478 TAGCTGGACTCGT>AAC Mowat-Wilson_syndrome ClinVar
chr2:145158782:145158828:[-] target - chr2:145158827-145158828 T>C LINC-JP ICGC
chr2:145158790:145158832:[-] target - chr2:145158827-145158828 T>C LINC-JP ICGC
chr2:145158790:145158857:[-] target - chr2:145158827-145158828 T>C LINC-JP ICGC
chr2:145158790:145158857:[-] target - chr2:145158843-145158844 C>T BTCA-JP ICGC
chr2:145187432:145187491:[-] target - chr2:145187476-145187477 C>T PRAD-CA ICGC
chr2:145187441:145187491:[-] target - chr2:145187476-145187477 C>T PRAD-CA ICGC
chrX:139866767:139866800:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC